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BIOL 471 (Spring 2007). Methods in Systematics.
Syllabus
Beaman et al. (2004)
Jarvis et al. (2003)
DIVA-GIS Manual
Topic 03 (Phylogenetic Inference).
A. Lectures and lecture supporting materials
Lecture 1 outline (5 March 2007): Phylogenetics basics
Lecture 1 powerpoint: click here
Lecture 2 outline (19 March 2007): Cladogram construction
B. Assignments and exercises
Exercise 01 (5 pts): Phylogenetic inference exercise using vertebrates as the ingroup
Exercise 02 (no pts): Fitch Optimization: Counting steps (and ancestor reconstruction)
C. Readings
Reading 01: Phylogenetics Reading Assignment 1
Reading 02: WinClada 1.0 manual
Readings 03: Second phylogenetics reading assignment handed out in class; no electronic versions available.
D. Supporting downloads
Phylogenetic programs: program 1 program 2
01.ss
02.ss
amphibia-test-cox1.nex
amphibia-test-18s.nex
Zardoya and Meyer (Tetrapod origins)
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